Crystal structure of UgpB from Mycobacterium tuberculosis in complex with glycerophosphocholine
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SBP_bac_1_N_1 | e6r1bA1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
A | SBP_bac_1_C_1 | e6r1bA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C_1 | ECOD (1.6) |
B | SBP_bac_1_N_1 | e6r1bB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
B | SBP_bac_1_C_1 | e6r1bB2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C_1 | ECOD (1.6) |
C | SBP_bac_1_N_1 | e6r1bC1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
C | SBP_bac_1_C_1 | e6r1bC2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C_1 | ECOD (1.6) |
D | SBP_bac_1_N_1 | e6r1bD2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
D | SBP_bac_1_C_1 | e6r1bD1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (utative) |
B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (utative) |
C | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (utative) |
D | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB | - | |||
Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB | - | |||
Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB | - | |||
Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB | - |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
MLZ | Parent Component: LYS :  AA0076 :  N6-methyl-L-lysine MOD:00085 | |
MLZ | Parent Component: LYS :  AA0076 , AA0076 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 | |
MLZ | Parent Component: LYS :  AA0076 , AA0076 , AA0076 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 | |
MLZ | Parent Component: LYS :  AA0076 , AA0076 , AA0076 , AA0076 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 |