9ULA | pdb_00009ula

Cryogenic temperature crystal structure of Nmar_1308 protein at 2.96 angstrom resolution

PDB DOI: https://doi.org/10.2210/pdb9ULA/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Nitrosopumilus maritimus SCM1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-04-19 Released: 2025-04-30
Deposition Author(s): Destan, E., DeMirci, H.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.96 ?
R-Value Free:
0.461 (Depositor), 0.459 (DCC)
R-Value Work:
0.442 (Depositor), 0.443 (DCC)
R-Value Observed:
0.443 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryogenic temperature crystal structure of Nmar_1308 protein at 2.96 angstrom resolution

Destan, E., DeMirci, H.

To be published.

Macromolecule Content

Total Structure Weight: 158.5 kDa
Atom Count: 10,893
Modelled Residue Count: 1,446
Deposited Residue Count: 1,476
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/isomerase	A, B, C, D, E A, B, C, D, E, F	246	Nitrosopumilus maritimus SCM1	Mutation(s): 0 Gene Names: Nmar_1308
UniProt
Find proteins for A9A2G5 (Nitrosopumilus maritimus (strain SCM1)) Explore A9A2G5 Go to UniProtKB: A9A2G5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A9A2G5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.96 ?
R-Value Free: 0.461 (Depositor), 0.459 (DCC)
R-Value Work: 0.442 (Depositor), 0.443 (DCC)
R-Value Observed: 0.443 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( ? )	Angle ( ? )
a = 356.96	α = 90
b = 130.53	β = 100.17
c = 82.64	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Turkey	119C132

Revision History (Full details and data files)

Version 1.0: 2025-04-30
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.