9M5O | pdb_00009m5o

Deposited: 2025-03-06 Released: 2025-06-04
Deposition Author(s): Sharma, V.K., Manickam, Y., Sharma, A., Bagale, S., Pradeepkumar, P.I.
Funding Organization(s): Department of Science & Technology (DST, India), Indian Council of Medical Research, Department of Biotechnology (DBT, India)

Experimental Data Snapshot

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
aspartate--tRNA ligase	A, B	536	Plasmodium vivax	Mutation(s): 0 Gene Names: PVC01_020016700, PVW1_020019400 EC: 6.1.1.12
UniProt
Find proteins for A0A1G4H6Y1 (Plasmodium vivax) Explore A0A1G4H6Y1 Go to UniProtKB: A0A1G4H6Y1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1G4H6Y1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DSZ (Subject of Investigation/LOI) Query on DSZ Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain F [auth B] mmCIF format, chain C [auth A] mmCIF format, chain F [auth B]	C [auth A], F [auth B]	5'-O-(L-alpha-aspartylsulfamoyl)adenosine C₁₄ H₁₉ N₇ O₉ S KMRBRMHHDAUXAY-UFIIOMENSA-N		Interactions Focus chain C [auth A] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain F [auth B]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] mmCIF format, chain D [auth A] mmCIF format, chain E [auth A] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B]	D [auth A], E [auth A], G [auth B], H [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B]

Experimental Data & Validation

Space Group: P 6₁ 2 2

Unit Cell:

Software Package:

Entry History & Funding Information

Deposition Author(s):

Sharma, V.K.

Funding Organization	Location	Grant Number
Department of Science & Technology (DST, India)	India	CRG/2023/004351
Indian Council of Medical Research	India	CAR-2024-01-000140
Department of Biotechnology (DBT, India)	India	PR32713