9F82 | pdb_00009f82

Arbitrium receptor from ATCC13952 phage in complex with GVVRGA peptide

PDB DOI: https://doi.org/10.2210/pdb9F82/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Bacillus subtilis
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2024-05-06 Released: 2025-05-21
Deposition Author(s): Gallego del Sol, F., Marina, A.
Funding Organization(s): Ministerio de Ciencia e Innovacion (MCIN)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 ?
R-Value Free:
0.277 (Depositor), 0.285 (DCC)
R-Value Work:
0.228 (Depositor), 0.237 (DCC)
R-Value Observed:
0.231 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Arbitrium receptor from ATCC13952 phage

Gallego del Sol, F., Marina, A.

To be published.

Macromolecule Content

Total Structure Weight: 183.44 kDa
Atom Count: 11,488
Modeled Residue Count: 1,388
Deposited Residue Count: 1,568
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Arbitrium receptor from ATCC13952 phage	A, C, E, G	386	Bacillus subtilis	Mutation(s): 0 Gene Names: KS08_10720
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-VAL-VAL-ARG-GLY-ALA	B, D, F, H [auth K]	6	Bacillus subtilis	Mutation(s): 0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 ?
R-Value Free: 0.277 (Depositor), 0.285 (DCC)
R-Value Work: 0.228 (Depositor), 0.237 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( ? )	Angle ( ? )
a = 67.343	α = 90
b = 82.959	β = 90.88
c = 146.86	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-05-21

Deposition Author(s):

Gallego del Sol, F.

Funding Organization	Location	Grant Number
Ministerio de Ciencia e Innovacion (MCIN)	Spain	--

Revision History (Full details and data files)

Version 1.0: 2025-05-21
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.