Download MendeleyCryoEM structure of monomeric quinol dependent nitric oxide reductase from Neisseria meningitidis
Gopalasingam, C.C., Shiro, Y., Tosha, T.To be published.
8ZGO | pdb_00008zgo
CryoEM structure of monomeric quinol dependent nitric oxide reductase from Neisseria meningitidis
- PDB DOI: https://doi.org/10.2210/pdb8ZGO/pdb
- EM Map EMD-60085: EMDB EMDataResource
- Classification: OXIDOREDUCTASE
- Organism(s): Neisseria meningitidis alpha14
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-05-09 Released: 2025-05-14
- Funding Organization(s): Japan Society for the Promotion of Science (JSPS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.25 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nitric-oxide reductase | 751 | Neisseria meningitidis alpha14 | Mutation(s): 0 Gene Names: norB, NMO_1451 EC: 1.7.99.7 |  | |
UniProt | |||||
Find proteins for C6S880 (Neisseria meningitidis (strain alpha14)) Explore C6S880 Go to UniProtKB: C6S880 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C6S880 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | B [auth A], C [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| FE Query on FE | D [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.25 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | 4.1.1 |
| MODEL REFINEMENT | PHENIX | 1.20 |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-05-14 Deposition Author(s): Gopalasingam, C.C., Shiro, Y., Tosha, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science (JSPS) | Japan | JP19H05761 |
| Japan Society for the Promotion of Science (JSPS) | Japan | JP20K22633 |
Revision History (Full details and data files)
- Version 1.0: 2025-05-14
Type: Initial release
